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130 entries « 2 of 7 »
110.

Kempher, Megan L; Tao, Xuanyu; Song, Rong; Wu, Bo; Stahl, David A; Wall, Judy D; Arkin, Adam P; Zhou, Aifen; Zhou, Jizhong

Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature. Journal Article

In: mBio, vol. 11, no. 4, 2020, ISSN: 2150-7511.

Abstract | Links | BibTeX | Tags: enigma

109.

Simon Rouxb Ankita Kotharia, Hanqiao Zhanga

Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance Journal Article

In: 2020.

BibTeX | Tags: enigma

108.

Kothari, Ankita; Roux, Simon; Zhang, Hanqiao; Prieto, Anatori; Soneja, Drishti; Chandonia, John-Marc; Spencer, Sarah J; Wu, Xiaoqin; Altenburg, Sarah; Fields, Matthew W; Deutschbauer, Adam M; Arkin, Adam P; Alm, Eric J; Chakraborty, Romy; Mukhopadhyay, Aindrila

Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance Journal Article

In: BioRxiv, 2020.

Abstract | Links | BibTeX | Tags: enigma

107.

Price, Morgan N; Deutschbauer, Adam M; Arkin, Adam P

Gapmind: automated annotation of amino acid biosynthesis. Journal Article

In: mSystems, vol. 5, no. 3, 2020.

Abstract | Links | BibTeX | Tags: enigma

106.

Carlson, Hans K; Lui, Lauren M; Price, Morgan N; Kazakov, Alexey E; Carr, Alex V; Kuehl, Jennifer V; Owens, Trenton K; Nielsen, Torben; Arkin, Adam P; Deutschbauer, Adam M

Selective carbon sources influence the end products of microbial nitrate respiration. Journal Article

In: The ISME Journal, vol. 14, no. 8, pp. 2034-2045, 2020, ISSN: 1751-7362.

Abstract | Links | BibTeX | Tags: enigma

105.

Caitlin M. Gionfriddo Regina L. Wilpiszeski, Ann M. Wymore

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations Journal Article

In: bioRxiv, 2020.

BibTeX | Tags: enigma

104.

Tian, Renmao; Ning, Daliang; He, Zhili; Zhang, Ping; Spencer, Sarah J; Gao, Shuhong; Shi, Weiling; Wu, Linwei; Zhang, Ya; Yang, Yunfeng; Adams, Benjamin G; Rocha, Andrea M; Detienne, Brittny L; Lowe, Kenneth A; Joyner, Dominique C; Klingeman, Dawn M; Arkin, Adam P; Fields, Matthew W; Hazen, Terry C; Stahl, David A; Alm, Eric J; Zhou, Jizhong

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Journal Article

In: Microbiome, vol. 8, no. 1, pp. 51, 2020.

Abstract | Links | BibTeX | Tags: enigma

103.

Torben N. Nielsen Lauren M. Lui, Adam P. Arkin

A method for achieving complete microbial genomes and better quality bins from metagenomics data Journal Article

In: BioRxiv, 2020.

BibTeX | Tags: arkin lab, enigma

102.

Lui, Lauren M; Nielsen, Torben N; Arkin, Adam P

A method for achieving complete microbial genomes and better quality bins from metagenomics data Journal Article

In: BioRxiv, 2020.

Abstract | Links | BibTeX | Tags: enigma

101.

Mengting Yuan Daliang Ning, Linwei Wu

A quantitative framework reveals the ecological drivers of grassland soil microbial community assembly in response to warming Journal Article

In: 2020.

BibTeX | Tags: enigma

100.

Kempher, M L; Tao, X; Song, R; Wu, B; Stahl, D A; Wall, J D; Arkin, A P; Zhou, A; Zhou, J

Effects of Genetic and Physiological Đivergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Ŧemperature Journal Article

In: mBio, vol. 11, no. 4, 2020.

Abstract | BibTeX | Tags: enigma

99.

Tian, R; Ning, D; He, Z; Zhang, P; Spencer, S J; Gao, S; Shi, W; Wu, L; Zhang, Y; Yang, Y; Adams, B G; Rocha, A M; Detienne, B L; Lowe, K A; Joyner, D C; Klingeman, D M; Arkin, A P; Fields, M W; Hazen, T C; Stahl, D A; Alm, E J; Zhou, J

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity Journal Article

In: Microbiome, vol. 8, no. 1, pp. 51, 2020.

Abstract | BibTeX | Tags: enigma

98.

Carlson, H K; Lui, L M; Price, M N; Kazakov, A E; Carr, A V; Kuehl, J V; Owens, T K; Nielsen, T; Arkin, A P; Deutschbauer, A M

Selective carbon sources influence the end products of microbial nitrate respiration Journal Article

In: ISME J, vol. 14, no. 8, pp. 2034–2045, 2020.

Abstract | BibTeX | Tags: arkin lab, enigma

97.

Zelaya, A J; Parker, A E; Bailey, K L; Zhang, P; Nostrand, J Van; Ning, D; Elias, D A; Zhou, J; Hazen, T C; Arkin, A P; Fields, M W

Ħigh spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer Journal Article

In: Water Res., vol. 164, pp. 114917, 2019.

Abstract | BibTeX | Tags: enigma

96.

Zelaya, Anna J; Parker, Albert E; Bailey, Kathryn L; Zhang, Ping; Nostrand, Joy Van; Ning, Daliang; Elias, Dwayne A; Zhou, Jizhong; Hazen, Terry C; Arkin, Adam P; Fields, Matthew W

High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer. Journal Article

In: Water Research, vol. 164, pp. 114917, 2019.

Abstract | Links | BibTeX | Tags: enigma

95.

Thorgersen, Michael P; Ge, Xiaoxuan; Poole, Farris L; Price, Morgan N; Arkin, Adam P; Adams, Michael W W

Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation. Journal Article

In: Applied and Environmental Microbiology, vol. 85, no. 17, 2019.

Abstract | Links | BibTeX | Tags: enigma

94.

Price, Morgan N; Zane, Grant M; Kuehl, Jennifer V; Melnyk, Ryan A; Wall, Judy D; Deutschbauer, Adam M; Arkin, Adam P

Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics. Journal Article

In: PLoS Genetics, vol. 15, no. 4, pp. e1008106, 2019.

Abstract | Links | BibTeX | Tags: enigma

93.

Price, Morgan N; Arkin, Adam P

Curated BLAST for genomes. Journal Article

In: mSystems, vol. 4, no. 2, 2019.

Abstract | Links | BibTeX | Tags: enigma

92.

Price, Morgan N; Ray, Jayashree; Iavarone, Anthony T; Carlson, Hans K; Ryan, Elizabeth M; Malmstrom, Rex R; Arkin, Adam P; Deutschbauer, Adam M

Oxidative pathways of deoxyribose and deoxyribonate catabolism. Journal Article

In: mSystems, vol. 4, no. 1, 2019.

Abstract | Links | BibTeX | Tags: enigma

91.

Mutalik, Vivek K; Novichkov, Pavel S; Price, Morgan N; Owens, Trenton K; Callaghan, Mark; Carim, Sean; Deutschbauer, Adam M; Arkin, Adam P

Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria. Journal Article

In: Nature Communications, vol. 10, no. 1, pp. 308, 2019, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: enigma

130 entries « 2 of 7 »