444 entries « 1 of 23 »
444.

Berliner, Aaron J.; Zezulka, Spencer; Hutchinson, Gwyneth A.; Bertoldo, Sophia; Cockell, Charles S.; Arkin, Adam P.

Domains of life sciences in spacefaring: what, where, and how to get involved Journal Article

In: npj Microgravity, vol. 10, no. 1, 2024, ISSN: 2373-8065.

Links | BibTeX | Tags: Agricultural and Biological Sciences (miscellaneous), Biochemistry, Genetics and Molecular Biology (miscellaneous), Materials Science (miscellaneous), Medicine (miscellaneous), Physics and Astronomy (miscellaneous), Space and Planetary Science

443.

Goff, Jennifer L.; Szink, Elizabeth G.; Durrence, Konnor L.; Lui, Lauren M.; Nielsen, Torben N.; Kuehl, Jennifer V.; Hunt, Kristopher A.; Chandonia, John-Marc; Huang, Jiawen; Thorgersen, Michael P.; Poole, Farris L.; Stahl, David A.; Chakraborty, Romy; Deutschbauer, Adam M.; Arkin, Adam P.; Adams, Michael W. W.

Genomic and environmental controls onCastellaniellabiogeography in an anthropogenically disturbed subsurface Journal Article

In: 2024.

Abstract | Links | BibTeX | Tags: enigma

442.

Hern, Kelsey E; Phillips, Ashlee M; Mageeney, Catherine M.; Williams, Kelly P.; Sinha, Anupama; Carlson, Hans K; Collette, Nicole M; Branda, Steven S; Arkin, Adam P

Niche exclusion of a lung pathogen in mice with designed probiotic communities Unpublished

bioRxiv, 2024.

Abstract | Links | BibTeX | Tags:

441.

Ning, Daliang; Wang, Yajiao; Fan, Yupeng; Wang, Jianjun; Nostrand, Joy D. Van; Wu, Liyou; Zhang, Ping; Curtis, Daniel J.; Tian, Renmao; Lui, Lauren; Hazen, Terry C.; Alm, Eric J.; Fields, Matthew W.; Poole, Farris; Adams, Michael W. W.; Chakraborty, Romy; Stahl, David A.; Adams, Paul D.; Arkin, Adam P.; He, Zhili; Zhou, Jizhong

Environmental stress mediates groundwater microbial community assembly Journal Article

In: Nat Microbiol, vol. 9, no. 2, pp. 490–501, 2024, ISSN: 2058-5276.

Links | BibTeX | Tags: Applied Microbiology and Biotechnology, Cell Biology, enigma, Genetics, Immunology, Microbiology, Microbiology (medical)

440.

Sander, Kyle; Abel, Anthony J.; Friedline, Skyler; Sharpless, William; Skerker, Jeffrey; Deutschbauer, Adam; Clark, Douglas S.; Arkin, Adam P.

Eliminating genes for a two‐component system increases PHB productivity in Cupriavidus basilensis 4G11 under PHB suppressing, nonstress conditions Journal Article

In: Biotech & Bioengineering, vol. 121, no. 1, pp. 139–156, 2024, ISSN: 1097-0290.

Abstract | Links | BibTeX | Tags: Applied Microbiology and Biotechnology, Bioengineering, Biotechnology, cubes

439.

Park, Helen; Joachimiak, Marcin P.; Jungbluth, Sean P.; Yang, Ziming; Riehl, William J.; Canon, R. Shane; Arkin, Adam P.; Dehal, Paramvir S.

A bacterial sensor taxonomy across earth ecosystems for machine learning applications Journal Article

In: mSystems, 2023, ISSN: 2379-5077.

Abstract | Links | BibTeX | Tags: Behavior and Systematics, Biochemistry, Computer Science Applications, Ecology, Evolution, Genetics, kbase, Microbiology, Modeling and Simulation, Molecular Biology, Physiology

438.

Bernstein, David B; Akkas, Batu; Price, Morgan N; Arkin, Adam P

Evaluating E. coli genome‐scale metabolic model accuracy with high‐throughput mutant fitness data Journal Article

In: Molecular Systems Biology, vol. 19, no. 12, 2023, ISSN: 1744-4292.

Abstract | Links | BibTeX | Tags: Applied Mathematics, Computational Theory and Mathematics, General Agricultural and Biological Sciences, General Biochemistry, General Immunology and Microbiology, Genetics and Molecular Biology, Information Systems

437.

Piya, Denish; Nolan, Nicholas; Moore, Madeline L.; Hernandez, Luis A. Ramirez; Cress, Brady F.; Young, Ry; Arkin, Adam P.; Mutalik, Vivek K.

Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages Journal Article

In: PLoS Biol, vol. 21, no. 12, 2023, ISSN: 1545-7885.

Abstract | Links | BibTeX | Tags: General Agricultural and Biological Sciences, General Biochemistry, General Immunology and Microbiology, General Neuroscience, Genetics and Molecular Biology

436.

Thorgersen, Michael P.; Goff, Jennifer L.; Poole, Farris L.; Walker, Kathleen F.; Putt, Andrew D.; Lui, Lauren M.; Hazen, Terry C.; Arkin, Adam P.; Adams, Michael W. W.

Mixed nitrate and metal contamination influences operational speciation of toxic and essential elements Journal Article

In: Environmental Pollution, vol. 338, 2023, ISSN: 0269-7491.

Links | BibTeX | Tags: General Medicine, Health, Pollution, Toxicology, Toxicology and Mutagenesis

435.

Carlson, Hans K.; Piya, Denish; Moore, Madeline L.; Magar, Roniya T.; Elisabeth, Nathalie H.; Deutschbauer, Adam M.; Arkin, Adam P.; Mutalik, Vivek K.

Geochemical constraints on bacteriophage infectivity in terrestrial environments Journal Article

In: ISME COMMUN., vol. 3, no. 1, 2023, ISSN: 2730-6151.

Abstract | Links | BibTeX | Tags: Automotive Engineering

434.

Averesch, Nils J. H.; Berliner, Aaron J.; Nangle, Shannon N.; Zezulka, Spencer; Vengerova, Gretchen L.; Ho, Davian; Casale, Cameran A.; Lehner, Benjamin A. E.; Snyder, Jessica E.; Clark, Kevin B.; Dartnell, Lewis R.; Criddle, Craig S.; Arkin, Adam P.

Microbial biomanufacturing for space-exploration—what to take and when to make Journal Article

In: Nat Commun, vol. 14, no. 1, 2023, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: cubes, General Biochemistry, General Chemistry, General Physics and Astronomy, Genetics and Molecular Biology, Multidisciplinary

433.

Ascensao, Joao A.; Wetmore, Kelly M.; Good, Benjamin H.; Arkin, Adam P.; Hallatschek, Oskar

Quantifying the local adaptive landscape of a nascent bacterial community Journal Article

In: Nat Commun, vol. 14, no. 1, 2023, ISSN: 2041-1723.

Abstract | Links | BibTeX | Tags: General Biochemistry, General Chemistry, General Physics and Astronomy, Genetics and Molecular Biology, Multidisciplinary

432.

Adams, Jeremy David; Sander, Kyle B.; Criddle, Craig S.; Arkin, Adam P.; Clark, Douglas S.

Engineering osmolysis susceptibility in Cupriavidus necator and Escherichia coli for recovery of intracellular products Journal Article

In: Microb Cell Fact, vol. 22, no. 1, 2023, ISSN: 1475-2859.

Abstract | Links | BibTeX | Tags: Applied Microbiology and Biotechnology, Bioengineering, Biotechnology, cubes

431.

Wu, Xiaoqin; Gushgari-Doyle, Sara; Lui, Lauren M.; Hendrickson, Andrew J.; Liu, Yina; Jagadamma, Sindhu; Nielsen, Torben N.; Justice, Nicholas B.; Simmons, Tuesday; Hess, Nancy J.; Joyner, Dominique C.; Hazen, Terry C.; Arkin, Adam P.; Chakraborty, Romy

Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone Journal Article

In: Appl Environ Microbiol, vol. 89, no. 6, 2023, ISSN: 1098-5336.

Abstract | Links | BibTeX | Tags: Applied Microbiology and Biotechnology, Biotechnology, Ecology, Food Science

430.

Adler, Benjamin A.; Chamakura, Karthik; Carion, Heloise; Krog, Jonathan; Deutschbauer, Adam M.; Young, Ry; Mutalik, Vivek K.; Arkin, Adam P.

Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins Journal Article

In: Nat Chem Biol, vol. 19, no. 6, pp. 759–766, 2023, ISSN: 1552-4469.

Abstract | Links | BibTeX | Tags: Cell Biology, Molecular Biology

429.

Trotter, Valentine V.; Shatsky, Maxim; Price, Morgan N.; Juba, Thomas R.; Zane, Grant M.; León, Kara B. De; Majumder, Erica L. -W.; Gui, Qin; Ali, Rida; Wetmore, Kelly M.; Kuehl, Jennifer V.; Arkin, Adam P.; Wall, Judy D.; Deutschbauer, Adam M.; Chandonia, John-Marc; Butland, Gareth P.

Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough Journal Article

In: Front. Microbiol., vol. 14, 2023, ISSN: 1664-302X.

Abstract | Links | BibTeX | Tags: Microbiology, Microbiology (medical)

428.

Makrygiorgos, Georgios; Berliner, Aaron J.; Shi, Fengzhe; Clark, Douglas S.; Arkin, Adam P.; Mesbah, Ali

Data‐driven flow‐map models for data‐efficient discovery of dynamics and fast uncertainty quantification of biological and biochemical systems Journal Article

In: Biotech & Bioengineering, vol. 120, no. 3, pp. 803–818, 2023, ISSN: 1097-0290.

Abstract | Links | BibTeX | Tags: Applied Microbiology and Biotechnology, Bioengineering, Biotechnology, cubes

427.

Chivian, Dylan; Jungbluth, Sean P.; Dehal, Paramvir S.; Wood-Charlson, Elisha M.; Canon, Richard S.; Allen, Benjamin H.; Clark, Mikayla M.; Gu, Tianhao; Land, Miriam L.; Price, Gavin A.; Riehl, William J.; Sneddon, Michael W.; Sutormin, Roman; Zhang, Qizhi; Cottingham, Robert W.; Henry, Chris S.; Arkin, Adam P.

Metagenome-assembled genome extraction and analysis from microbiomes using KBase Journal Article

In: Nat Protoc, vol. 18, no. 1, pp. 208–238, 2023, ISSN: 1750-2799.

Links | BibTeX | Tags: General Biochemistry, Genetics and Molecular Biology

426.

Price, Morgan N.; Arkin, Adam P.

Interactive Analysis of Functional Residues in Protein Families Journal Article

In: mSystems, vol. 7, no. 6, 2022, ISSN: 2379-5077.

Abstract | Links | BibTeX | Tags: Behavior and Systematics, Biochemistry, Computer Science Applications, Ecology, Evolution, Genetics, Microbiology, Modeling and Simulation, Molecular Biology, Physiology

425.

G. Berliner Makrygiorgos, A. J. Shi

Data-driven flow-map models for data-efficient discovery of dynamics and fast uncertainty quantification of biological and biochemical systems Journal Article

In: Biotechnol Bioeng, vol. 120, iss. 3, pp. 803-818, 2022, ISSN: 1097-0290 .

Abstract | Links | BibTeX | Tags: cubes

444 entries « 1 of 23 »