@article{Wu2023,

title = {Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone},

author = {Xiaoqin Wu and Sara Gushgari-Doyle and Lauren M. Lui and Andrew J. Hendrickson and Yina Liu and Sindhu Jagadamma and Torben N. Nielsen and Nicholas B. Justice and Tuesday Simmons and Nancy J. Hess and Dominique C. Joyner and Terry C. Hazen and Adam P. Arkin and Romy Chakraborty},

editor = {Jennifer B. Glass},

doi = {10.1128/aem.00500-23},

issn = {1098-5336},

year  = {2023},

date = {2023-06-28},

journal = {Appl Environ Microbiol},

volume = {89},

number = {6},

publisher = {American Society for Microbiology},

abstract = {In this study, we explored the links between geochemical parameters, microbial community structure and metabolic potential across the depth of sediment, including the shallow subsurface, vadose zone, capillary fringe, and saturated zone. Our results revealed that microbes in the terrestrial subsurface can be highly localized, with communities rarely being interconnected along the depth.},

keywords = {Applied Microbiology and Biotechnology, Biotechnology, Ecology, Food Science},

pubstate = {published},

tppubtype = {article}

}

@article{Tao2022,

title = {Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans},

author = {Xuanyu Tao and Aifen Zhou and Megan L. Kempher and Jiantao Liu and Mu Peng and Yuan Li and Jonathan P. Michael and Romy Chakraborty and Adam M. Deutschbauer and Adam P. Arkin and Jizhong Zhou},

editor = {Arpita Bose},

doi = {10.1128/aem.00401-22},

issn = {1098-5336},

year  = {2022},

date = {2022-07-26},

journal = {Appl Environ Microbiol},

volume = {88},

number = {14},

publisher = {American Society for Microbiology},

abstract = {

            Rhodanobacter denitrificans

            is capable of denitrification and is also resistant to toxic heavy metals and low pH. Accordingly, the presence of

            Rhodanobacter

            species at a particular environmental site is considered an indicator of nitrate and uranium contamination.

          },

keywords = {Applied Microbiology and Biotechnology, Biotechnology, Ecology, Food Science},

pubstate = {published},

tppubtype = {article}

}

@article{Thorgersen2021,

title = {Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics},

author = {Michael P. Thorgersen and Jingchuan Xue and Erica L. W. Majumder and Valentine V. Trotter and Xiaoxuan Ge and Farris L. Poole and Trenton K. Owens and Lauren M. Lui and Torben N. Nielsen and Adam P. Arkin and Adam M. Deutschbauer and Gary Siuzdak and Michael W. W. Adams},

editor = {Rebecca E. Parales},

doi = {10.1128/aem.01037-21},

issn = {1098-5336},

year  = {2021},

date = {2021-10-14},

journal = {Appl Environ Microbiol},

volume = {87},

number = {21},

publisher = {American Society for Microbiology},

abstract = {

            Studying microbial interactions with their environment can lead to a deeper understanding of biological molecular mechanisms. In the manuscript, two global techniques, RB-TnSeq and activity metabolomics, were successfully used to probe the interactions between a metal-resistant microorganism,

            Pantoea

            sp. strain MT58, and metals contaminating a site where the organism can be located.

          },

keywords = {Applied Microbiology and Biotechnology, Biotechnology, Ecology, Food Science},

pubstate = {published},

tppubtype = {article}

}