CARION Heloise heloisecarion@gmail.com 1

Heloise Carion

Heloise Carion is a fourth year Bioengineering undergraduate student at UC Berkeley with a concentration in synthetic and computational biology. Her interests include genetics, systems biology, and computation. In 2018, she joined the Arkin Laboratory, and has helped develop technology for high-throughput characterization of phage genes.

Ashley Azadeh

Ashley Azadeh

As of 2020, Ashley is a Scientist at Roche.

Yasha Ektefaie

Yasha Ektefaie

As of 2020, Yasha is a PhD student at Harvard Medical School.

Alejandro Ramirez

Alejandro Ramirez

Alejandro Ramirez is a Bioengineering Research Associate in the Arkin Laboratory at LBNL. He studied bioengineering, concentrating in synthetic biology and systems biology, and metabolic engineering at the University of California, Berkeley. In 2019 he interned at Amyris, Inc. as a fermentation operations associate for tanks sized 250 mL to 2.0 L before starting full-time at Endless West as a production associate in the creation of beverages and food from component chemicals. As his passion was still in synthetic biology, Alejandro returned to work for the Arkin Lab in 2020 joining the ENIGMA project under the supervision of Vivek Mutalik. His interests in science are in sustainable engineering, biological interactions, and genetic tools used in directed-evolution.

morgan rufus Morgan Price 1

Morgan Price

Thanks to cheap DNA sequencing, we are slowly starting to understand the incredible diversity of bacteria. Morgan Price builds computational tools to help us use all this data to understand how diverse bacteria work. This understanding can help us manage our environment, control the bacteria inside us, and develop new biotechnologies.

Andrew Hendrickson

Drew Hendrickson

Drew Hendrickson is a researcher with the Arkin Lab at LBNL. He graduated from UC Berkeley in 2019 with his B.S. in Chemical Biology and Microbial Biology with a focus in environmental and ecological microbiology. Previously, Drew worked in bioremediation to elucidate the microbial transformations of hydrocarbon contaminants by using advanced mass spectrometry and sequencing techniques. He is interested in systems biology, data science, and “-omics” to understand our microbial world. Since joining the ENIGMA team, he employs improved sequencing techniques to study novel microbes from diverse environments. Outside of the lab, he enjoys dance, LGBTQ advocacy, and hiking across the California landscape.

Jennifer Kuehl

Jennifer Kuehl

Jennifer Kuehl is a staff research associate that has worked for LBNL since 2002. She graduated from the University of Missouri- St.Louis with a BS in Biology. After graduation she drove to California for a vacation and stayed to start a life there. Her career at the lab started at the Joint Genome Institute in the Sanger sequencing production line as they were completing the human genome. She then transferred to the evolutionary genomics group at the JGI where the research was focused on using plasmids genomes for reconstructing the evolutionary history of everything from lettuce to worm lizards to stony corals to stalk eyed flies. In 2008, she started in the Arkin lab constructing a barcoded mutant library in the non-model sulfate reducing bacteria, Desulfovibrio alaskensis G20 for improving gene annotations. Currently she is working on pipeline to identify microbial interactions important for fitness in a given growth condition using high throughput enrichment culturing and 16s amplicon community sequencing. She feels fortunate to be able to work with and develop friendships with so many interesting Berkeley students from around the world.

XBD201808 00430 029 Fangchao Song

Fangchao Song

Fangchao Song is a postdoctoral fellow in Arkin Lab at Lawrence Berkeley National Laboratory. He is working on droplet-based high throughput method to reveal bacterial interactions in complex microbial community and profile the microbial physiology in different nutrients and environments, under the project of Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA). Before joining the lab, Fangchao was a graduate student working on mathematical modeling of polymerization and biodegradable polymer manufacturing. In 2010, he started a new journey in the microbiology world during his Ph.D research on microbial biofilms and their antibiotic resistance. Since then, he is fascinated by the complexity and orderliness of microbiome, and enthusiastic about designing new method by combining experiments and modeling to better understand the function and dynamics of microbiome. Fangchao obtained his B.S. from Shandong University in 2003, M.S. from Zhejiang University in 2010, and Ph.D. from Syracuse University in 2016, all in Chemical Engineering. He wants to be a researcher and educator in the future.

Lauren Lui

Lauren Lui

Lauren Lui is a postdoctoral fellow in the Arkin Lab at Lawrence Berkeley National Laboratory. She was born and raised in Northern California and has been bumming around the UC system her whole career. She studied mathematical biology and bioinformatics at UC Davis, and received her PhD in Biomolecular Engineering and Bioinformatics from UC Santa Cruz. Ever since she started doing research, Lauren has sought to integrate quantitative and computational methods with experimental biology. As an undergraduate she studied vernal pool ecology and DNA supercoiling. As a graduate student she used RNAseq and bioinformatics to study small RNAs in archaea. Currently, her postdoctoral research projects include dissecting plant-microbe interactions with transposon mutant libraries, using synthetic microbial communities to understand the ecological and genetic factors of microbial interactions, and metagenomics of environmental microbes. Her ultimate goal is to be able to predict microbial interactions and community assembly from genome content and environmental measurements. In addition to her scientific work, Lauren is the co-secretary for the Women Scientists and Engineers Council at LBNL and loves doing photography, playing the ukulele, and illustrating with graphic arts.

Yolanda Yue Huang

Yolanda (Yue) Huang

Yolanda is a postdoc in the Arkin lab and a Life Sciences Research Foundation (LSRF) fellow sponsored by Astellas Pharmaceuticals. She received her Bachelor’s from McGill University in Biochemistry. She completed her PhD in Chemical Biology with Emily Balskus at Harvard University where she characterized a new glycyl radical enzyme responsible for 4-hydroxyproline metabolism that is prevalent among gut anaerobes. In the Arkin lab, she is working to identify phage factors that influence bacterial physiology through multiple approaches – computational tools, data mining, and functional genomics. Outside of the lab, she can be found active in the outdoors, travelling, cooking, and filling up space with plants.