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128 entries « 1 of 7 »
128.

Paradis, Charles J; Miller, John I; Moon, Ji-Won; Spencer, Sarah J; Lui, Lauren M; Nostrand, Joy D Van; Ning, Daliang; Steen, Andrew D; McKay, Larry D; Arkin, Adam P; Zhou, Jizhong; Alm, Eric J; Hazen, Terry C

Sustained ability of a natural microbial community to remove nitrate from groundwater Journal Article

In: BioRxiv, 2021.

Abstract | Links | BibTeX | Tags: enigma

127.

Lui, Lauren M; Nielsen, Torben N; Arkin, Adam P

A method for achieving complete microbial genomes and improving bins from metagenomics data. Journal Article

In: PLoS Computational Biology, 17 (5), pp. e1008972, 2021.

Abstract | Links | BibTeX | Tags: enigma

126.

Nayfach, Stephen; Roux, Simon; Seshadri, Rekha; Udwary, Daniel; Varghese, Neha; Schulz, Frederik; Wu, Dongying; Paez-Espino, David; Chen, I-Min; Huntemann, Marcel; Palaniappan, Krishna; Ladau, Joshua; Mukherjee, Supratim; Reddy, T B K; Nielsen, Torben; Kirton, Edward; Faria, José P; Edirisinghe, Janaka N; Henry, Christopher S; Jungbluth, Sean P; Chivian, Dylan; Dehal, Paramvir; Wood-Charlson, Elisha M; Arkin, Adam P; Tringe, Susannah G; Visel, Axel; IMG,; Woyke, Tanja; Mouncey, Nigel J; Ivanova, Natalia N; Kyrpides, Nikos C; Eloe-Fadrosh, Emiley A

A genomic catalog of Earth's microbiomes. Journal Article

In: Nature Biotechnology, 39 (4), pp. 499-509, 2021, ISSN: 1087-0156.

Abstract | Links | BibTeX | Tags: enigma

125.

Lui, Lauren M; Majumder, Erica L-W; Smith, Heidi J; Carlson, Hans K; von Netzer, Frederick; Fields, Matthew W; Stahl, David A; Zhou, Jizhong; Hazen, Terry C; Baliga, Nitin S; Adams, Paul D; Arkin, Adam P

Mechanism across scales: A holistic modeling framework integrating laboratory and field studies for microbial ecology. Journal Article

In: Frontiers in microbiology, 12 , pp. 642422, 2021, ISSN: 1664-302X.

Abstract | Links | BibTeX | Tags: enigma

124.

Wall, Judy D; Zane, Grant M; Juba, Thomas R; Kuehl, Jennifer V; Ray, Jayashree; Chhabra, Swapnil R; Trotter, Valentine V; Shatsky, Maxim; León, Kara B De; Keller, Kimberly L; Bender, Kelly S; Butland, Gareth; Arkin, Adam P; Deutschbauer, Adam M

Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough. Journal Article

In: Microbiology Resource Announcements, 10 (11), 2021.

Abstract | Links | BibTeX | Tags: enigma

123.

Song, Fangchao; Kuehl, Jennifer V; Chandran, Arjun; Arkin, Adam P

A simple, cost-effective and automation-friendly direct PCR approach for bacterial community analysis Journal Article

In: BioRxiv, 2021.

Abstract | Links | BibTeX | Tags: enigma

122.

Carim, Sean; Azadeh, Ashley L; Kazakov, Alexey E; Price, Morgan N; Walian, Peter J; Lui, Lauren M; Nielsen, Torben N; Chakraborty, Romy; Deutschbauer, Adam M; Mutalik, Vivek K; Arkin, Adam P

Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins. Journal Article

In: The ISME Journal, 2021, ISSN: 1751-7362.

Abstract | Links | BibTeX | Tags: enigma

121.

Price, Morgan N; Deutschbauer, Adam M; Arkin, Adam P

Four families of folate-independent methionine synthases. Journal Article

In: PLoS Genetics, 17 (2), pp. e1009342, 2021.

Abstract | Links | BibTeX | Tags: enigma

120.

Trotter, Valentine V; Shatsky, Maxim; Price, Morgan N; Juba, Thomas R; Zane, Grant M; Leon, Kara P De; Majumder, Erica L; Gui, Qin; Ali, Rida; Wetmore, Kelly M; Kuehl, Jennifer V; Arkin, Adam P; Wall, Judy D; Deutschbauer, Adam M; Chandonia, John-Marc; Butland, Gareth P

Large-scale Genetic Characterization of a Model Sulfate Reducing Bacterium Journal Article

In: BioRxiv, 2021.

Abstract | Links | BibTeX | Tags: enigma

119.

Ge, Xiaoxuan; Thorgersen, Michael P; Poole, Farris L; Deutschbauer, Adam M; Chandonia, John-Marc; Novichkov, Pavel S; Adams, Paul D; Arkin, Adam P; Hazen, Terry C; Adams, Michael W W

Draft Genome Sequence of Bacillus sp. Strain EB106-08-02-XG196, Isolated from High-Nitrate-Contaminated Sediment. Journal Article

In: Microbiology Resource Announcements, 9 (44), 2020.

Abstract | Links | BibTeX | Tags: enigma

118.

Michael P. Thorgersen Xiaoxuan Ge, Farris L. Poole II; Adams, Michael W. W.

Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation Journal Article

In: 2020.

Links | BibTeX | Tags: enigma

117.

Ge, Xiaoxuan; Thorgersen, Michael P; Poole, Farris L; Deutschbauer, Adam M; Chandonia, John-Marc; Novichkov, Pavel S; Gushgari-Doyle, Sara; Lui, Lauren M; Nielsen, Torben; Chakraborty, Romy; Adams, Paul D; Arkin, Adam P; Hazen, Terry C; Adams, Michael W W

Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation Journal Article

In: Frontiers in microbiology, 11 , 2020, ISSN: 1664-302X.

Links | BibTeX | Tags: enigma

116.

Mutalik, Vivek K; Adler, Benjamin A; Rishi, Harneet S; Piya, Denish; Zhong, Crystal; Koskella, Britt; Kutter, Elizabeth M; Calendar, Richard; Novichkov, Pavel S; Price, Morgan N; Deutschbauer, Adam M; Arkin, Adam P

High-throughput mapping of the phage resistance landscape in E. coli. Journal Article

In: PLoS Biology, 18 (10), pp. e3000877, 2020, ISSN: 1545-7885.

Abstract | Links | BibTeX | Tags: enigma

115.

Wilpiszeski, Regina L; Gionfriddo, Caitlin M; Wymore, Ann M; Moon, Ji-Won; Lowe, Kenneth A; Podar, Mircea; Rafie, Sa'ad; Fields, Matthew W; Hazen, Terry C; Ge, Xiaoxuan; Poole, Farris; Adams, Michael W W; Chakraborty, Romy; Fan, Yupeng; Nostrand, Joy D Van; Zhou, Jizhong; Arkin, Adam P; Elias, Dwayne A

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations. Journal Article

In: Plos One, 15 (9), pp. e0232437, 2020.

Abstract | Links | BibTeX | Tags: enigma

114.

Ning, Daliang; Yuan, Mengting; Wu, Linwei; Zhang, Ya; Guo, Xue; Zhou, Xishu; Yang, Yunfeng; Arkin, Adam P; Firestone, Mary K; Zhou, Jizhong

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming. Journal Article

In: Nature Communications, 11 (1), pp. 4717, 2020.

Abstract | Links | BibTeX | Tags: enigma

113.

Moon, J W; Paradis, C J; Joyner, D C; von Netzer, F; Majumder, E L; Dixon, E R; Podar, M; Ge, X; Walian, P J; Smith, H J; Wu, X; Zane, G M; Walker, K F; Thorgersen, M P; Ii, F L Poole; Lui, L M; Adams, B G; Leon, K B De; Brewer, S S; Williams, D E; Lowe, K A; Rodriguez, M; Mehlhorn, T L; Pfiffner, S M; Chakraborty, R; Arkin, A P; Wall, J D; Fields, M W; Adams, M W W; Stahl, D A; Elias, D A; Hazen, T C

Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer Journal Article

In: Chemosphere, 255 , pp. 126951, 2020.

Abstract | BibTeX | Tags: enigma

112.

Moon, Ji-Won; Paradis, Charles J; Joyner, Dominique C; von Netzer, Frederick; Majumder, Erica L; Dixon, Emma R; Podar, Mircea; Ge, Xiaoxuan; Walian, Peter J; Smith, Heidi J; Wu, Xiaoqin; Zane, Grant M; Walker, Kathleen F; Thorgersen, Michael P; II, Farris L Poole; Lui, Lauren M; Adams, Benjamin G; León, Kara B De; Brewer, Sheridan S; Williams, Daniel E; Lowe, Kenneth A; Rodriguez, Miguel; Mehlhorn, Tonia L; Pfiffner, Susan M; Chakraborty, Romy; Arkin, Adam P; Wall, Judy D; Fields, Matthew W; Adams, Michael W W; Stahl, David A; Elias, Dwayne A; Hazen, Terry C

Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer Journal Article

In: Chemosphere, 255 , pp. 126951, 2020, ISSN: 00456535.

Links | BibTeX | Tags: enigma

111.

Xuanyu Tao Megan L. Kempher, Rong Song

Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature Journal Article

In: Mbio, 11 (4), pp. 2020, 2020.

BibTeX | Tags: enigma

110.

Kempher, Megan L; Tao, Xuanyu; Song, Rong; Wu, Bo; Stahl, David A; Wall, Judy D; Arkin, Adam P; Zhou, Aifen; Zhou, Jizhong

Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature. Journal Article

In: mBio, 11 (4), 2020, ISSN: 2150-7511.

Abstract | Links | BibTeX | Tags: enigma

109.

Simon Rouxb Ankita Kotharia, Hanqiao Zhanga

Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance Journal Article

In: 2020.

BibTeX | Tags: enigma

128 entries « 1 of 7 »