@article{Ning2024,

title = {Environmental stress mediates groundwater microbial community assembly},

author = {Daliang Ning and Yajiao Wang and Yupeng Fan and Jianjun Wang and Joy D. Van Nostrand and Liyou Wu and Ping Zhang and Daniel J. Curtis and Renmao Tian and Lauren Lui and Terry C. Hazen and Eric J. Alm and Matthew W. Fields and Farris Poole and Michael W. W. Adams and Romy Chakraborty and David A. Stahl and Paul D. Adams and Adam P. Arkin and Zhili He and Jizhong Zhou},

doi = {10.1038/s41564-023-01573-x},

issn = {2058-5276},

year  = {2024},

date = {2024-02-00},

urldate = {2024-02-00},

journal = {Nat Microbiol},

volume = {9},

number = {2},

pages = {490--501},

publisher = {Springer Science and Business Media LLC},

keywords = {Applied Microbiology and Biotechnology, Cell Biology, enigma, Genetics, Immunology, Microbiology, Microbiology (medical)},

pubstate = {published},

tppubtype = {article}

}

@article{Adler2023,

title = {Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins},

author = {Benjamin A. Adler and Karthik Chamakura and Heloise Carion and Jonathan Krog and Adam M. Deutschbauer and Ry Young and Vivek K. Mutalik and Adam P. Arkin},

doi = {10.1038/s41589-023-01269-7},

issn = {1552-4469},

year  = {2023},

date = {2023-06-00},

journal = {Nat Chem Biol},

volume = {19},

number = {6},

pages = {759--766},

publisher = {Springer Science and Business Media LLC},

abstract = {AbstractSingle-strand RNA (ssRNA) Fiersviridae phages cause host lysis with a product of single gene (sgl for single-gene lysis; product Sgl) that induces autolysis. Many different Sgls have been discovered, but the molecular targets of only a few have been identified. In this study, we used a high-throughput genetic screen to uncover genome-wide host suppressors of diverse Sgls. In addition to validating known molecular mechanisms, we discovered that the Sgl of PP7, an ssRNA phage of Pseudomonas aeruginosa, targets MurJ, the flippase responsible for lipid II export, previously shown to be the target of the Sgl of coliphage M. These two Sgls, which are unrelated and predicted to have opposite membrane topology, thus represent a case of convergent evolution. We extended the genetic screens to other uncharacterized Sgls and uncovered a common set of multicopy suppressors, suggesting that these Sgls act by the same or similar mechanism.},

keywords = {Cell Biology, Molecular Biology},

pubstate = {published},

tppubtype = {article}

}

@article{Peng2022,

title = {Genomic Features and Pervasive Negative Selection in

            \textit{Rhodanobacter}

            Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer},

author = {Mu Peng and Dongyu Wang and Lauren M. Lui and Torben Nielsen and Renmao Tian and Megan L. Kempher and Xuanyu Tao and Chongle Pan and Romy Chakraborty and Adam M. Deutschbauer and Michael P. Thorgersen and Michael W. W. Adams and Matthew W. Fields and Terry C. Hazen and Adam P. Arkin and Aifen Zhou and Jizhong Zhou},

editor = {Kristen M. DeAngelis},

doi = {10.1128/spectrum.02591-21},

issn = {2165-0497},

year  = {2022},

date = {2022-02-23},

journal = {Microbiol Spectr},

volume = {10},

number = {1},

publisher = {American Society for Microbiology},

abstract = {

            Despite the dominance of

            Rhodanobacter

            species in the subsurface of the contaminated Oak Ridge Reservation (ORR) site, very little is known about the mechanisms underlying their adaptions to the various stressors present at ORR. Recently, multiple

            Rhodanobacter

            strains have been isolated from the ORR groundwater samples from several wells with varying geochemical properties.

          },

keywords = {Cell Biology, Ecology, General Immunology and Microbiology, Genetics, Infectious Diseases, Microbiology (medical), Physiology},

pubstate = {published},

tppubtype = {article}

}