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13.

Kothari, Ankita; Roux, Simon; Zhang, Hanqiao; Prieto, Anatori; Soneja, Drishti; Chandonia, John-Marc; Spencer, Sarah; Wu, Xiaoqin; Altenburg, Sara; Fields, Matthew W.; Deutschbauer, Adam M.; Arkin, Adam P.; Alm, Eric J.; Chakraborty, Romy; Mukhopadhyay, Aindrila

Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance Journal Article

In: mSystems, vol. 6, no. 3, 2021, ISSN: 2379-5077.

Abstract | Links | BibTeX | Tags: Behavior and Systematics, Biochemistry, biodesign, Computer Science Applications, Ecology, Evolution, Genetics, Microbiology, Modeling and Simulation, Molecular Biology, Physiology

12.

Ashley L. Azadeh Sean Carim, Alexey E. Kazakov

Systematic Discovery of Pseudomonad Genetic Factors Involved in Sensitivity to Tailocins Journal Article

In: 2020.

BibTeX | Tags: arkin lab, biodesign

11.

Crystal Zhong Benjamin A. Adler, Hualan Liu

Systematic Discovery of Salmonella Phage-Host Interactions via High-Throughput Genome-Wide Screens Journal Article

In: bioRxiv, 2020.

BibTeX | Tags: arkin lab, biodesign

10.

Benjamin A. Adler Vivek K. Mutalik, Harneet S. Rishi

High-throughput mapping of the phage resistance landscape in E. coli Journal Article

In: 2020.

BibTeX | Tags: arkin lab, biodesign

9.

Egbert, R G; Rishi, H S; Adler, B A; McCormick, D M; Toro, E; Gill, R T; Arkin, A P

A versatile platform strain for high-fidelity multiplex genome editing Journal Article

In: Nucleic Acids Res., vol. 47, no. 6, pp. 3244–3256, 2019.

Abstract | BibTeX | Tags: arkin lab, biodesign

8.

Price, M N; Zane, G M; Kuehl, J V; Melnyk, R A; Wall, J D; Deutschbauer, A M; Arkin, A P

Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics Journal Article

In: PLoS Genet., vol. 15, no. 4, pp. e1008106, 2019.

Abstract | BibTeX | Tags: arkin lab, biodesign

7.

Tei, M; Perkins, M L; Hsia, J; Arcak, M; Arkin, A P

Đesigning Spatially Đistributed Gene Regulatory Networks Ŧo Elicit Contrasting Patterns Journal Article

In: vol. 8, no. 1, pp. 119–126, 2019.

Abstract | BibTeX | Tags: arkin lab, biodesign

6.

Mutalik, V K; Novichkov, P S; Price, M N; Owens, T K; Callaghan, M; Carim, S; Deutschbauer, A M; Arkin, A P

Đual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria Journal Article

In: Nat Commun, vol. 10, no. 1, pp. 308, 2019.

Abstract | BibTeX | Tags: arkin lab, biodesign

5.

Thompson, M G; Blake-Hedges, J M; Cruz-Morales, P; Barajas, J F; Curran, S C; Eiben, C B; Harris, N C; Benites, V T; Gin, J W; Sharpless, W A; Twigg, F F; Skyrud, W; Krishna, R N; Pereira, J H; Baidoo, E E K; Petzold, C J; Adams, P D; Arkin, A P; Deutschbauer, A M; Keasling, J D

Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism Journal Article

In: mBio, vol. 10, no. 3, 2019.

Abstract | BibTeX | Tags: arkin lab, biodesign

4.

Price, M N; Ray, J; Iavarone, A T; Carlson, H K; Ryan, E M; Malmstrom, R R; Arkin, A P; Deutschbauer, A M

Oxidative Pathways of Đeoxyribose and Đeoxyribonate Catabolism Journal Article

In: mSystems, vol. 4, no. 1, 2019.

Abstract | BibTeX | Tags: arkin lab, biodesign

3.

Venturelli, O S; Carr, A C; Fisher, G; Hsu, R H; Lau, R; Bowen, B P; Hromada, S; Northen, T; Arkin, A P

Đeciphering microbial interactions in synthetic human gut microbiome communities Journal Article

In: Mol. Syst. Biol., vol. 14, no. 6, pp. e8157, 2018.

Abstract | BibTeX | Tags: arkin lab, biodesign

2.

Price, M N; Zane, G M; Kuehl, J V; Melnyk, R A; Wall, J D; Deutschbauer, A M; Arkin, A P

Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics Journal Article

In: PLoS Genet., vol. 14, no. 1, pp. e1007147, 2018.

Abstract | BibTeX | Tags: arkin lab, biodesign

1.

Coradetti, S T; Pinel, D; Geiselman, G M; Ito, M; Mondo, S J; Reilly, M C; Cheng, Y F; Bauer, S; Grigoriev, I V; Gladden, J M; Simmons, B A; Brem, R B; Arkin, A P; Skerker, J M

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides Journal Article

In: Elife, vol. 7, 2018.

Abstract | BibTeX | Tags: arkin lab, biodesign