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20.

Price, M N; Deutschbauer, A M; Arkin, A P

GapMind: Automated Annotation of Amino Acid Biosynthesis (Journal Article)

mSystems, 5 (3), 2020.

(Abstract | BibTeX | Tags: arkin lab)

19.

Sean Carim Ashley L. Azadeh, Alexey Kazakov Morgan Price Peter Walian Romy Chakraborty Adam Deutschbauer Vivek Mutalik Adam Arkin E N J M K P

Systematic Discovery of Pseudomonad Genetic Factors Involved in Sensitivity to Tailocins (Journal Article)

2020.

(BibTeX | Tags: arkin lab, biodesign)

18.

Benjamin A. Adler Crystal Zhong, Hualan Liu Elizabeth Kutter Adam Deutschbauer Vivek Mutalik Adam Arkin M K P

Systematic Discovery of Salmonella Phage-Host Interactions via High-Throughput Genome-Wide Screens (Journal Article)

bioRxiv, 2020.

(BibTeX | Tags: arkin lab, biodesign)

17.

Price, Morgan N; Arkin, Adam P

Short Methionine Synthases (Journal Article)

2020.

(BibTeX | Tags: arkin lab)

16.

Lauren M. Lui Torben N. Nielsen, Adam Arkin P

A method for achieving complete microbial genomes and better quality bins from metagenomics data (Journal Article)

BioRxiv, 2020.

(BibTeX | Tags: arkin lab, enigma)

15.

Vivek K. Mutalik Benjamin A. Adler, Harneet Rishi Denish Piya Crystal Zhong Britt Koskella Richard Calendar Pavel Novichkov Morgan Price Adam Deutschbauer Adam Arkin S N M P

High-throughput mapping of the phage resistance landscape in E. coli (Journal Article)

2020.

(BibTeX | Tags: arkin lab, biodesign)

14.

Carlson, H K; Lui, L M; Price, M N; Kazakov, A E; Carr, A V; Kuehl, J V; Owens, T K; Nielsen, T; Arkin, A P; Deutschbauer, A M

Selective carbon sources influence the end products of microbial nitrate respiration (Journal Article)

ISME J, 14 (8), pp. 2034–2045, 2020.

(Abstract | BibTeX | Tags: arkin lab, enigma)

13.

Egbert, R G; Rishi, H S; Adler, B A; McCormick, D M; Toro, E; Gill, R T; Arkin, A P

A versatile platform strain for high-fidelity multiplex genome editing (Journal Article)

Nucleic Acids Res., 47 (6), pp. 3244–3256, 2019.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

12.

Price, M N; Zane, G M; Kuehl, J V; Melnyk, R A; Wall, J D; Deutschbauer, A M; Arkin, A P

Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics (Journal Article)

PLoS Genet., 15 (4), pp. e1008106, 2019.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

11.

Price, M N; Arkin, A P

Curated BLASŦ for Genomes (Journal Article)

mSystems, 4 (2), 2019.

(Abstract | BibTeX | Tags: arkin lab)

10.

Tei, M; Perkins, M L; Hsia, J; Arcak, M; Arkin, A P

Đesigning Spatially Đistributed Gene Regulatory Networks Ŧo Elicit Contrasting Patterns (Journal Article)

8 (1), pp. 119–126, 2019.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

9.

Mutalik, V K; Novichkov, P S; Price, M N; Owens, T K; Callaghan, M; Carim, S; Deutschbauer, A M; Arkin, A P

Đual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria (Journal Article)

Nat Commun, 10 (1), pp. 308, 2019.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

8.

Thompson, M G; Blake-Hedges, J M; Cruz-Morales, P; Barajas, J F; Curran, S C; Eiben, C B; Harris, N C; Benites, V T; Gin, J W; Sharpless, W A; Twigg, F F; Skyrud, W; Krishna, R N; Pereira, J H; Baidoo, E E K; Petzold, C J; Adams, P D; Arkin, A P; Deutschbauer, A M; Keasling, J D

Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism (Journal Article)

mBio, 10 (3), 2019.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

7.

Thorgersen, M P; Ge, X; Poole, F L; Price, M N; Arkin, A P; Adams, M W W

Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Ħeavily Contaminated Oak Ridge Reservation (Journal Article)

85 (17), 2019.

(Abstract | BibTeX | Tags: arkin lab, enigma)

6.

Price, M N; Ray, J; Iavarone, A T; Carlson, H K; Ryan, E M; Malmstrom, R R; Arkin, A P; Deutschbauer, A M

Oxidative Pathways of Đeoxyribose and Đeoxyribonate Catabolism (Journal Article)

mSystems, 4 (1), 2019.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

5.

Venturelli, O S; Carr, A C; Fisher, G; Hsu, R H; Lau, R; Bowen, B P; Hromada, S; Northen, T; Arkin, A P

Đeciphering microbial interactions in synthetic human gut microbiome communities (Journal Article)

Mol. Syst. Biol., 14 (6), pp. e8157, 2018.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

4.

Cambray, G; Guimaraes, J C; Arkin, A P

Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli (Journal Article)

Nat. Biotechnol., 36 (10), pp. 1005–1015, 2018.

(Abstract | BibTeX | Tags: arkin lab)

3.

Price, M N; Zane, G M; Kuehl, J V; Melnyk, R A; Wall, J D; Deutschbauer, A M; Arkin, A P

Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics (Journal Article)

PLoS Genet., 14 (1), pp. e1007147, 2018.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

2.

Coradetti, S T; Pinel, D; Geiselman, G M; Ito, M; Mondo, S J; Reilly, M C; Cheng, Y F; Bauer, S; Grigoriev, I V; Gladden, J M; Simmons, B A; Brem, R B; Arkin, A P; Skerker, J M

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides (Journal Article)

Elife, 7 , 2018.

(Abstract | BibTeX | Tags: arkin lab, biodesign)

1.

Weiss, C V; Roop, J I; Hackley, R K; Chuong, J N; Grigoriev, I V; Arkin, A P; Skerker, J M; Brem, R B

Genetic dissection of interspecific differences in yeast thermotolerance (Journal Article)

Nat. Genet., 50 (11), pp. 1501–1504, 2018.

(Abstract | BibTeX | Tags: arkin lab)